Breaking: #93029 - Dropped deleted field from sys_refindex
See forge#93029
Description
The database field 
        deleted has been removed from table
        sys_. Therefore, the table does no longer store
relations between soft deleted records.
Following properties and methods of class
        \TYPO3\ have been set to
protected:
temp_flex Relations relations- not scanned by extension scannerhashVersion get- not scanned by extension scannerWorkspace Id () getRelations_ proc DB () setReference Value_ db Rels () setReference Value_ softreferences () is- not scanned by extension scannerReference Field () 
Following methods of class 
        \TYPO3\
have been removed:
generateRef Index Data () createEntry Data () createEntry Data_ db Rels () createEntry Data_ softreferences () 
Impact
Accessing the properties of class 
        Reference or calling
dropped or protected methods will raise fatal PHP errors.
Querying the 
        deleted field of table 
        sys_ will raise a
doctrine dbal exception.
Affected Installations
The hash sums of existing table rows change. The reference index
should be updated, typically by using the CLI command
        bin/
Codewise, instances with extensions that query table 
        sys_
or use class 
        Reference may be affected. The extension
scanner helps to find some usages.
Migration
Use the CLI command 
        bin/ to update
the reference index.
The 
        sys_ field should be dropped from database
queries.
When accessing class 
        Reference, use the main API method
        ->update, plus a couple of other less often
used methods.